Hello, I’m Gavin

B.S. in Biomolecular Engineering and Bioinformatics
University of California, Santa Cruz

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Work I've Done:

Stanford RSL Project

Undergraduate Research Intern – Stanford Medicine, Radiological Sciences Laboratory (RSL)

PyTorch, NumPy, Multilayer Perceptrons (MLPs), Diffusion Tensor MRI

  • Designed and implemented a novel machine learning approach using PyTorch MLPs to reconstruct high-resolution neural shape models from Diffusion Tensor MRI scans.
  • Enhanced anatomical fidelity by building models that improved structural detail capture in reconstructed neural shapes.
  • Built an end-to-end preprocessing and modeling pipeline in PyTorch and NumPy, including segmentation and normalization.
  • Collaborated with a Stanford Medicine postdoctoral researcher, delivering reproducible, production-ready code.
Spiking Neural Networks Research

Deep Learning Research Assistant – Neuromorphic Computing Group

Python, PyTorch, Spiking Neural Networks (SNNs)

  • Created a Python tutorial notebook introducing Spiking Neural Networks (SNNs).
  • Demonstrated benefits of SNNs for reducing model storage and energy usage.
  • Collaborated with researchers developing open-source tools for SNN model conversion and optimization in PyTorch.
Polycythemia Vera Analysis

Computational Analysis of Polycythemia Vera Driver Mutation

Gene expression analysis, Pathway enrichment, Machine learning, Network modeling

  • Developed a computational pipeline to confirm JAK2 V617F as the primary driver mutation in Polycythemia Vera.
  • Integrated gene expression analysis, pathway enrichment, and machine learning classification.
  • Conducted differential gene expression studies using publicly available genomic datasets (GEO, TCGA, COSMIC).
  • Built and analyzed network models to investigate biological pathways and mutation effects.
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